draw_chromosome_gc.pl (by Jan Paces):This program is in perl. It is designed
for drawing pictures of gc profiles of long nucleotide sequences,
e.g. whole chromosomes. This version needs to have installed
perl (>5.0) with GD.pm module. Everything you need you can find at CPAN.
DicodonUsage (by Jan Paces): This set of perl scripts visualize dicodon bios
in procaryotic genomes. It consist from count_dicodons.pl, which counts dicodons in given training
set and two scripts dicodons.pl and dicodons_seq.pl, which draw dicodon preferences for
six reading frames.
phyloMOD (by Simone Scalabrin): Perl script to compare
orthologous sequences and extract putative regulatory regions.
It is based on modular structure of regulatory regions and phylogenetic
footprinting of orthologous sequences.
| Jan Paces Last modified: Thu Apr 7 15:20:46 CEST 2005 |
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