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phyloMOD user manual

Simone Scalabrin, `scalabrin-TA-dimi.uniud.it`

v0.01, 5 April 2005

phyloMOD.pl is a Perl script to compare orthologous sequences and extract putative regulatory regions. It is based on modular structure of regulatory regions and phylogenetic footprinting of orthologous sequences.

1. Introduction

2. Biological meaning

3. Installation/Download

4. How to run it

5. Graphical output

6. Comparison with Avid/Vista

7. Work in progress

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