Comparison between phyloMOD.pl and avid/Vista.
As you can notice peaks in Vista are identified by
module/hits in phyloMOD.pl.
In phyloMOD.pl output you can see both species coordinates while in
Vista visualizations you have just one axis with coordinates for a single
reference sequence (in this case mouse).
In the next picture you can see that modules can cross
each other since DNA bendability allows such a solution.
You can even notice that a potential regulatory region in the upstream
region of mouse moved downstream in chicken.
